Ameeta Kelekar, PhD

Associate Professor, Department of Laboratory Medicine and Pathology

Ameeta Kelekar

Contact Info

ameeta@umn.edu

Office Phone 612-625-3204

Fax 612-625-1121

Lab Phone 612-626-2358

Mailing Address:
MMC 609 Mayo
8609
420 Delaware
Minneapolis, MN 55455

PhD, Princeton University (Molecular Biology), 1987

MSc, Bombay University, Bombay, India, (Biochemistry), 1978

MS, Princeton University (Molecular Biology), 1985

Bangalore University, Bangalor, India (Chemistry, Botany, Zoology), 1976

Summary

Dr. Kelekar’s laboratory is focused primarily on altered metabolism in cancer, a fairly new field of research. The way metabolic pathways operate differently in malignant versus healthy tissue is proving to be one of the hallmarks of cancer. Kelekar initiated her work in cancer metabolism while studying the mechanisms underlying apoptosis or programmed cell death, specifically the role of bcl-2 and other protein families in regulating apoptosis. Interactions between bcl-2 proteins and the bcl-2 homology domain 3 (BH3)-only proteins are pivotal in regulating apoptosis. Dr. Kelekar’s group discovered that the BH3-only protein Noxa, a canonical death-promoting protein, for example, also plays a role in cancer cell metabolism. Noxa is induced in response to apoptotic stimuli in most human cells of epithelial origin but is constitutively expressed in proliferating myeloid and lymphoid cells and required for apoptosis in response to glucose stress. Kelekar and her colleagues identified a serine on Noxa that was phosphorylated by the kinase Cdk5 in myeloid and lymphoid cancers. This amino acid modification inactivates Noxa’s apoptotic or cell-killing function, potentially giving tumor cells that can employ this mechanism a survival advantage.

Cells can use glucose to trigger the apoptosis avoidance mechanism such as the one enabled by Cdk5-inhibited Noxa. Kelekar and her colleagues propose that the serine residue on Noxa can serve as a glucose-sensitive “toggle switch” controlling both proliferation and apoptosis in leukemias and lymphomas. Normal cells use glucose for the energy-generating chemical reactions that take place in mitochondria through the TCA (tricarboxylic acid) cycle. Kelekar has found that Noxa expression promotes diversion of glucose for the production of biomass and that mitochondria of Noxa-overexpressing cancer cells, as well as proliferating normal cells, use the amino acid glutamine rather than glucose to supply the cell’s energy needs. Interestingly, it turns out that Noxa regulates multiple metabolic functions in leukemia cells in addition to regulating glucose and glutamine utilization. Metabolomics tools can now be employed to delineate the metabolic signaling pathways that normal and cancer cells employ to carry out critical biochemical functions. Sorting out the highly sensitive metabolic needs of cancer cells and targeting key molecules like Noxa constitute a promising avenue for small-molecule drug development.

Research

Research Summary/Interests

Mechanisms of Apoptosis
Research in my laboratory focuses on pathways of cell survival and death with special emphasis on Bcl-2 family proteins as regulators of these pathways. Interactions between multi-domain Bcl-2 proteins and members of the BH3-only Bcl-2 family sub-class are pivotal in promoting cell death. Recently, our studies on human BH3-only protein, Noxa, have revealed a post-translational regulatory pathway that suppresses its pro-apoptotic function and imparts to it a novel metabolic and pro-survival role in human hematological malignancies. We are currently investigating the role of this protein and its binding partner, Mcl-1L, in regulating glucose metabolism in leukemia cells. The recognition that cancer cells exhibit altered metabolism and depend heavily on glucose as their major source of energy is leading to novel therapeutic strategies targeted at glycolytic (glucose breakdown) pathways. Major research areas in the laboratory are briefly described below:

Current Research 

Autophagy – its role in cell survival and tumor progression
DNA damaging drugs induce apoptosis via the intrinsic pathway through apoptosome formation and caspase-9 activation. MCF-7 breast cancer cells show little to no caspase-9 activation and a delayed death response response to DNA damaging drugs. Further investigation identified autophagy or “self-consumption” as the underlying mechanism for the delayed apoptotic response. Our studies suggested that reduced autophagy may be an adaptive strategy in immortalized and non-invasive breast tumor cells faced with genotoxic stress and underscored the need for autophagy inhibitors in combination with conventional chemotherapeutic drugs in treating early breast cancers (Abedin et al 2007). We are currently focusing some of our research efforts on the contribution of defective autophagy to tumor initiation and progression in breast cancer.

In collaboration with the group of Dr. S. Ramakrishnan at the University of Minnesota we have investigated the mechanism of action of the angiogenic inhibitor peptides, kringle 5 and endostatin, in human endothelial cells. These studies (Bui-Nguyen et al2007 and 2009) suggested that both kringle 5 and endostatin induced an apoptotic as well as an autophagic response in endothelial cells, but interfering with the autophagic survival response sensitized cells to the anti-angiogenic effects of the inhibitors by promoting a switch to robust apoptotic cell death.

BH3-only protein, Noxa – its role in apoptosis and glucose metabolism in leukemia cells
We are currently investigating the post-translational regulation of a human BH3-only protein, Noxa, in hematological malignancies. Human Noxa in stably and constitutively expressed in a majority of leukemia cells and kept in check through post-translational control mechanisms. Interaction of Noxa with its pro-survival binding partner Mcl-1L plays a major role in the apoptotic response of proliferating lymphoid and myeloid leukemia cells to glucose deprivation. We show that, in the presence of adequate glucose, human Noxa is phosphorylated on serine13 by the cyclin dependent kinase, Cdk5, and sequestered within large multi-protein cytosolic particles (Lowman et al2010). Apoptotic triggers, particularly glucose limitation, dephosphorylate Noxa, unmasking its pro-apoptotic function. An understanding of how Noxa is post-translationally regulated will aid in the design of therapeutic strategies that target the modified protein and promote its release from sequestration. Paradoxically, modified sequestered Noxa stimulates glucose consumption and lactate production in T acute lymphocytic leukemia (T-ALL) cells. Our observations point to a novel ‘survival’ role for Noxa in regulating glucose metabolism in cancer cells; specifically our data point to a role for Noxa in the anabolic pentose phosphate pathway that is crucial for dividing cells. Additionally, we have identified the protein components of two Noxa/Mcl-1L-containing complexes from proliferating leukemia cells by mass spectrometry and are currently investigation their function.

Noxa, a canonical tumor suppressor like other BH3-only proteins, had not previously been associated with a survival role. Our studies reveal Noxa as the second BH3-only protein, after family member BAD, to be attributed a metabolic function and underscore the intriguing possibility that other BH3-only members may hold day jobs as pro-survival proteins.

Publications

  • Hanse, E. A., C. Ruan, M. Kachman, D. Wang, X. H. Lowman, and A. Kelekar. Cytosolic malate dehydrogenase activity helps support glycolysis in actively proliferating cells and cancer. Oncogene advance online publication http://www.nature.com/doifinder/10.1038/onc.2017.36
  • Yan, Y., Hanse, E.A., Stedman, K., Benson, J.M., Lowman, X.H., Subramanian, S., and Kelekar, A. Transcription factor C/EBP- induces tumor suppressor phosphatase PHLPP2 through repression of the miR-17~92 cluster in differentiating AML cells. Cell Death and Differentiation. Epub ahead of print. doi:10.1038/cdd.2016.1. PMID26868909 
  • Olenchock B. A., J. Moslehi, A. H. Baik, S. M. Davidson, J. Williams, W. J. Gibson, K. A. Pierce, C. Miller, E. A. Hanse, A. Kelekar, L. B. Sullivan, A. Wagers, C. B. Clish, M. G. Vander Heiden, William G. Kaelin, Jr. Inhibition of the EglN1 Oxygen Sensor and Rerouting of ?-Ketoglutarate are Sufficient for Remote Ischemic Protection. Cell,2016. 164:884-895. http://dx.doi.org/10.1016/j.cell.2016.02.006
  • Karim, C. B., L. M. Espinoza-Fonseca, J. Zachary, E. A. Hanse, J. S. Gaynes, D. D. Thomas and A. Kelekar. Structural Mechanism for Regulation of Bcl-2 protein Noxa by phosphorylation. Scientific Reports, 2015. 5: 14557. PMC4585961
  • Espinoza-Fonseca, L. M. and A. Kelekar. High-resolution structural characterization of Noxa, an intrinsically disordered protein by microsecond molecular dynamics simulations. Molecular BioSystems. 2015. 11: 1850-1856. PMC4470721
  • Das, S. G., D. L. Hermanson, N. Bleeker, X. Lowman, Y. Li, A. Kelekar, C. Xing. 2013. Ethyl 2-amino-6-(3,5-dimethoxyphenyl)-4-(2-ethoxy-2-oxoethyl)-4H-chromene-3-carboxylate (CXL017) – a novel scaffold that re-sensitizes multidrug resistant leukemia cells to chemotherapy. ACS Chemical Biology 8 (2): 327-335.
  • Sanchez, C., P. Perfornis, A. Oskowitz, A. Boonjindasup, D. Cai. S. Dhule. B. Rowan, A. Kelekar, D. Krause, and R. Pochampally. Activation of autophagy in mesenchymal stem cells provides tumor stromal support.Carcinogenesis. 2011 Jul;32(7):964-72. doi: 10.1093/carcin/bgr029.
  • Lowman X. H., M. A. McDonnell, O. A. Odumade, A. Kosloske, C. Jenness, C. B. Karim, R. Jemmerson, and A. Kelekar . The Proapoptotic Function of Noxa in Human Leukemia Cells Is Regulated by the Kinase Cdk5 and by Glucose.Molecular Cell, 2010. 40 (5): 823-833.
  • Preview to Lowman et al article:
    Gimenez-Cassina, A and N.N. Danial. Noxa: a Sweet Twist to Survival and more.Molecular Cell, 2010. 40 (5): 687-688.
  • Codina, R., A. Vanasse, A. Kelekar, V. Vezys and R. Jemmerson. 2010. Cytochrome c-Induced Lymphocyte Death from the Outside In: Inhibition by Serum Leucine-Rich Alpha-2-Glycoprotein-1.Apoptosis, 15: 139-152.
  • Bui Nguyen, T.M., I.V. Subramanian, X. Xue, G. Ghosh, P. Nguyen, A. Kelekar, and S. Ramakrishnan. 2009. Endostatin induces autophagy in endothelial cells by modulating Beclin-1 and b-catenin levels. Journal of Cellular and Molecular Medicine, 13:3687-3698.
  • Kelekar, A. 2008. Edited and Introduced the Review Series Autophagy in Higher Eukaryotes- A matter of survival or death. Autophagy, 4 (5): 555 - 556.
  • McDonnell, M. A., M. J. Abedin, M. Melendez, T. Platikanova, J. R. Ecklund, K. Ahmed, and A. Kelekar. 2008. Phosphorylation of Caspase-9 by Casein Kinase 2 regulates its cleavage by Caspase-8. Journal of Biological Chemistry 283 (29), 20149-20158 (E-pub ahead of print), May 8, 2008).
  • Klionsky, D. et al. 2008. Guidelines for the use and interpretation of assays for monitoring autophagy in higher eukaryotes. Autophagy, 4(2):151-175.
  • Ramakrishnan. S., T. Bui Nguyen, I. V Subramanian and A. Kelekar. 2007. Autophagy and Angiogenesis - an Addendum. Autophagy. 3:512-515.
  • Zhao, Y.B., J. Altman, J.L. Coloff, C.E. Herman, S.R. Jacobs, H.L. Wieman, J.A. Wofford, L.N. Dimascio, O. Ilkayeva, A. Kelekar, T. Reya and J.C. Rathmell. 2007. GSK-3 alpha/beta Mediate a Glucose-Sensitive Anti-Apoptotic Signaling Pathway to Stabilize Mcl-1. Mol. Cell. Biol. 27:4328-4339.
  • Abedin, M. J, D. Wang, M. A. McDonnell, U. Lehmann, and A. Kelekar. 2007. Autophagy delays apoptotic death in breast cancer cells following DNA damage. Cell Death and Differentiation. 14:500-510; advance online publication, September 22, 2006; di:10.1038/sj.cdd.4402039.
  • Bui-Nguyen, T., I. V Subramanian, A. Kelekar and S. Ramakrishnan. 2007. Angiogenesis Inhibitor, Kringle 5 of human plasminogen, induces both autophagy and apoptotic death in endothelial cells. Blood 109(11):4793-802.
  • Kelekar, A. 2005. Autophagy in Cell Injury: Mechanisms, Responses and Repair, Annals of the New York Academy of Sciences. 2006. 1066:1363.015.
  • Goldstein, J. C., C. Muñoz-Pinedo, J-E. Ricci, S. R. Adams, A. Kelekar, M. Schuler, R. Y. Tsien, and D. R. Green. 2005. Cytochrome c is released in a single step during apoptosis. Cell Death and Differentiation 12, 453-462.
  • Wang, D., M.A. McDonnell and A. Kelekar. 2005. Multi-probe RPA template sets to study RNA modulation and transcriptional control of BH3-only members of the Bcl-2 family. Cancer Detection and Prevention, 29:189-200.
  • Ke, H., J. Pei, Z. Ni, H. Xia, H. Qi, T. Woods, A. Kelekar, and W. Tao. 2004. Putative tumor suppressor LATS2 induces apoptosis through down regulation of Bcl-2 and Bcl-xL. Experimental Cell Research, 298:329-338. Abstract
  • Vallera D. A, N. Jin, Y. Shu, A. Panoskaltsis-Mortari, A. Kelekar, and W. Chen. 2003. Retroviral immunotoxin gene therapy of leukemia in mice using leukemia-specific T cells transduced with an IL-3/Bax hybrid gene. Human Gene Therapy 4:1787-98.
  • McDonnell, M. A., D. Wang, S M. Khan, M. G. Vander Heiden, and A. Kelekar. 2003. Caspase-9 is activated in a cytochrome c-independent manner early during TNFa-induced apoptosis in murine cells. Cell Death and Differentiation. 10: 1005-1015.
  • Kelekar, A. and C. B. Thompson. BH domains. The Encyclopedia of Molecular Medicine 2001. John Wiley & Sons, New York., pages 353-357.
  • Kelekar, A. and C. B. Thompson. Bcl-2 proteins. The Encyclopedia of Molecular Medicine 2001, John Wiley & Sons, New York, pages 328-333.
  • Kaspar A. A., S. Okada, J. Kumar, F. R. Poulain, K. A. Drouvalakis, A. Kelekar, D. A. Hanson, R. M. Kluck, Y. Hitoshi, D. E. Johnson, C. J. Froelich, C. B. Thompson, D. D. Newmeyer, A. Anel, C. Clayberger, and A. M. Krensky. 2001. A distinct pathway of cell-mediated apoptosis initiated by granulysin. J Immunol. 167: 350-356.
  • Kelekar, A., B. S. Chang, M. H. Harris, J. E. Harlan, S. W. Fesik and C. B. Thompson.1999. The BH3 domain of Bcl-xS is required for the inhibition of the anti-apoptotic function of Bcl-xL. Mol. Cell. Biol. 19: 6673-6681.
  • Pena, J. C., A. Kelekar, E. V. Fuchs and C. B. Thompson. 1999. Manipulation of outer root sheath survival perturbs the hair growth cycle. The EMBO Journal 18: 3596-3603.
  • Minn, A. J., C. S. Kettlun, H. Liang, A. Kelekar, M. G. Vander Heiden, B. S. Chang, S. W. Fesik, M. Fill and C. B. Thompson. 1999. Bcl-xL regulates apoptosis by heterodimerization-dependent and heterodimerization-independent mechanisms. The EMBO Journal 18: 632-643.
  • Kelekar, A. and C.B. Thompson. 1998. Bcl-2 Homology Domains: The role of the BH3 domain in apoptosis. Trends in Cell Biology 8: 324-330.
  • Kelekar, A., B. S. Chang, J. E. Harlan, S. W. Fesik and C. B. Thompson. 1997. Bad is a BH3 domain-containing protein that forms an inactivating dimer with Bcl-xL. Mol. Cell. Biol. 17: 7040-7046.